J5_5JVH_006
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5JVH|1|X|U|2059, 5JVH|1|X|G|2407, 5JVH|1|X|G|2408, 5JVH|1|X|A|2409, 5JVH|1|X|U|2410
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5JVH_006 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.0589
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5JVH|1|X|U|2057
5JVH|1|X|U|2058
5JVH|1|X|U|2059
5JVH|1|X|A|2060
*
5JVH|1|X|U|2222
5JVH|1|X|U|2223
5JVH|1|X|U|2224
5JVH|1|X|G|2225
*
5JVH|1|X|C|2237
5JVH|1|X|G|2238
*
5JVH|1|X|C|2260
5JVH|1|X|G|2261
*
5JVH|1|X|C|2406
5JVH|1|X|G|2407
5JVH|1|X|G|2408
5JVH|1|X|A|2409
5JVH|1|X|U|2410
5JVH|1|X|A|2411
5JVH|1|X|A|2412
5JVH|1|X|A|2413
5JVH|1|X|A|2414
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain A
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain U
- 50S ribosomal protein L28
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