J5_5K0Y_001

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUUGUCU*AAAAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

39 nucleotides

Bulged bases

5K0Y|1|A|A|580, 5K0Y|1|A|C|583

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5K0Y|1|A|C|30
5K0Y|1|A|U|31
5K0Y|1|A|U|32
5K0Y|1|A|G|33
5K0Y|1|A|U|34
5K0Y|1|A|C|35
5K0Y|1|A|U|36
*
5K0Y|1|A|A|509
5K0Y|1|A|A|510
5K0Y|1|A|A|511
5K0Y|1|A|A|512
5K0Y|1|A|A|513
5K0Y|1|A|U|514
5K0Y|1|A|A|515
5K0Y|1|A|A|516
5K0Y|1|A|C|517
*
5K0Y|1|A|G|548
5K0Y|1|A|G|549
5K0Y|1|A|A|550
5K0Y|1|A|A|551
5K0Y|1|A|U|552
5K0Y|1|A|G|553
5K0Y|1|A|A|554
5K0Y|1|A|G|555
*
5K0Y|1|A|C|575
5K0Y|1|A|G|576
5K0Y|1|A|A|577
5K0Y|1|A|G|578
5K0Y|1|A|G|579
5K0Y|1|A|A|580
5K0Y|1|A|U|581
5K0Y|1|A|C|582
5K0Y|1|A|C|583
5K0Y|1|A|A|584
5K0Y|1|A|U|585
*
5K0Y|1|A|A|631
5K0Y|1|A|U|632
5K0Y|1|A|A|633
5K0Y|1|A|G|634

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein S9 (Predicted)

Chain Q

ribosomal protein uS12

Chain V

ribosomal protein eS30