Loop J5_5K0Y

3D structure

PDB id: 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
Description: m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å

Loop

Sequence: GUCGCUCGCUCCUCUCCUACUU*AUGCCGACGGCG*CGUG*CCGAU*ACGACC
Length: 49 nucleotides
Bulged bases: 5K0Y|1|A|C|129, 5K0Y|1|A|U|132, 5K0Y|1|A|C|136, 5K0Y|1|A|U|137, 5K0Y|1|A|C|139, 5K0Y|1|A|C|142
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5K0Y|1|A|G|123
5K0Y|1|A|U|124
5K0Y|1|A|C|125
5K0Y|1|A|G|126
5K0Y|1|A|C|127
5K0Y|1|A|U|128
5K0Y|1|A|C|129
5K0Y|1|A|G|130
5K0Y|1|A|C|131
5K0Y|1|A|U|132
5K0Y|1|A|C|133
5K0Y|1|A|C|134
5K0Y|1|A|U|135
5K0Y|1|A|C|136
5K0Y|1|A|U|137
5K0Y|1|A|C|138
5K0Y|1|A|C|139
5K0Y|1|A|U|140
5K0Y|1|A|A|141
5K0Y|1|A|C|142
5K0Y|1|A|U|143
5K0Y|1|A|U|144
*
5K0Y|1|A|A|175
5K0Y|1|A|U|176
5K0Y|1|A|G|177
5K0Y|1|A|C|178
5K0Y|1|A|C|179
5K0Y|1|A|G|180
5K0Y|1|A|A|181
5K0Y|1|A|C|182
5K0Y|1|A|G|183
5K0Y|1|A|G|184
5K0Y|1|A|C|185
5K0Y|1|A|G|186
*
5K0Y|1|A|C|209
5K0Y|1|A|G|210
5K0Y|1|A|U|211
5K0Y|1|A|G|212
*
5K0Y|1|A|C|301
5K0Y|1|A|C|302
5K0Y|1|A|G|303
5K0Y|1|A|A|304
5K0Y|1|A|U|305
*
5K0Y|1|A|A|326
5K0Y|1|A|C|327
5K0Y|1|A|G|328
5K0Y|1|A|A|329
5K0Y|1|A|C|330
5K0Y|1|A|C|331

Current chains

Chain A: 18S ribosomal RNA

Nearby chains

Chain I: 40S ribosomal protein S4
Chain o: 40S ribosomal protein S8
Chain q: 40S ribosomal protein S6

J5_5K0Y_004