J5_5KCR_001

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5KCR|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5KCR_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0344

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5KCR|1|1A|C|47
5KCR|1|1A|G|48
5KCR|1|1A|A|49
5KCR|1|1A|U|50
5KCR|1|1A|G|51
5KCR|1|1A|A|52
5KCR|1|1A|A|53
5KCR|1|1A|G|54
*
5KCR|1|1A|C|116
5KCR|1|1A|G|117
5KCR|1|1A|A|118
5KCR|1|1A|A|119
5KCR|1|1A|U|120
5KCR|1|1A|G|121
*
5KCR|1|1A|C|130
5KCR|1|1A|A|131
*
5KCR|1|1A|U|148
5KCR|1|1A|A|149
5KCR|1|1A|U|150
*
5KCR|1|1A|A|176
5KCR|1|1A|G|177
5KCR|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34