J5_5KCR_008
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5KCR_008 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0726
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5KCR|1|1a|C|36
5KCR|1|1a|U|37
5KCR|1|1a|G|38
5KCR|1|1a|G|39
*
5KCR|1|1a|C|403
5KCR|1|1a|G|404
5KCR|1|1a|U|405
5KCR|1|1a|G|406
*
5KCR|1|1a|C|436
5KCR|1|1a|U|437
5KCR|1|1a|U|438
5KCR|1|1a|U|439
5KCR|1|1a|C|440
5KCR|1|1a|A|441
5KCR|1|1a|G|442
*
5KCR|1|1a|C|492
5KCR|1|1a|A|493
5KCR|1|1a|G|494
5KCR|1|1a|A|495
5KCR|1|1a|A|496
5KCR|1|1a|G|497
5KCR|1|1a|A|498
5KCR|1|1a|A|499
5KCR|1|1a|G|500
*
5KCR|1|1a|C|545
5KCR|1|1a|A|546
5KCR|1|1a|A|547
5KCR|1|1a|G|548
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1l
- 30S ribosomal protein S12
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