J5_5KCR_010
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGG*CGC*GUG*CUUA*UC
- Length
- 16 nucleotides
- Bulged bases
- 5KCR|1|1x|U|8, 5KCR|1|1x|G|9
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5KCR_010 not in the Motif Atlas
- Homologous match to J5_3ZGZ_001
- Geometric discrepancy: 0.2401
- The information below is about J5_3ZGZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_97113.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5KCR|1|1x|G|7
5KCR|1|1x|U|8
5KCR|1|1x|G|9
5KCR|1|1x|G|10
*
5KCR|1|1x|C|26
5KCR|1|1x|G|27
5KCR|1|1x|C|28
*
5KCR|1|1x|G|44
5KCR|1|1x|U|45
5KCR|1|1x|G|46
*
5KCR|1|1x|C|57
5KCR|1|1x|U|58
5KCR|1|1x|U|59
5KCR|1|1x|A|60
*
5KCR|1|1x|U|76
5KCR|1|1x|C|77
Current chains
- Chain 1x
- P-site tRNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 50S ribosomal protein L5
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1m
- 30S ribosomal protein S13
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