J5_5KPS_002

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5KPS_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0772

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5KPS|1|27|C|36
5KPS|1|27|U|37
5KPS|1|27|G|38
5KPS|1|27|G|39
*
5KPS|1|27|C|403
5KPS|1|27|G|404
5KPS|1|27|U|405
5KPS|1|27|G|406
*
5KPS|1|27|C|436
5KPS|1|27|U|437
5KPS|1|27|U|438
5KPS|1|27|U|439
5KPS|1|27|C|440
5KPS|1|27|A|441
5KPS|1|27|G|442
*
5KPS|1|27|C|492
5KPS|1|27|A|493
5KPS|1|27|G|494
5KPS|1|27|A|495
5KPS|1|27|A|496
5KPS|1|27|G|497
5KPS|1|27|A|498
5KPS|1|27|A|499
5KPS|1|27|G|500
*
5KPS|1|27|C|545
5KPS|1|27|A|546
5KPS|1|27|A|547
5KPS|1|27|G|548

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S12

Chain 9

30S ribosomal protein S4