J5_5KPS_004

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5KPS|1|28|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5KPS_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0909

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5KPS|1|28|C|47
5KPS|1|28|G|48
5KPS|1|28|A|49
5KPS|1|28|U|50
5KPS|1|28|G|51
5KPS|1|28|A|52
5KPS|1|28|A|53
5KPS|1|28|G|54
*
5KPS|1|28|C|116
5KPS|1|28|G|117
5KPS|1|28|A|118
5KPS|1|28|A|119
5KPS|1|28|U|120
5KPS|1|28|G|121
*
5KPS|1|28|C|130
5KPS|1|28|A|131
*
5KPS|1|28|U|148
5KPS|1|28|A|149
5KPS|1|28|U|150
*
5KPS|1|28|A|176
5KPS|1|28|G|177
5KPS|1|28|G|178

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34