3D structure

PDB id
5KPW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
5KPW|1|27|U|1758, 5KPW|1|27|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5KPW_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0947
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5KPW|1|27|G|1674
5KPW|1|27|C|1675
5KPW|1|27|A|1676
5KPW|1|27|A|1677
5KPW|1|27|A|1678
5KPW|1|27|A|1679
5KPW|1|27|U|1680
5KPW|1|27|G|1681
5KPW|1|27|G|1682
*
5KPW|1|27|C|1706
5KPW|1|27|G|1707
*
5KPW|1|27|U|1751
5KPW|1|27|C|1752
*
5KPW|1|27|G|1756
5KPW|1|27|A|1757
5KPW|1|27|U|1758
5KPW|1|27|A|1759
5KPW|1|27|C|1760
5KPW|1|27|C|1761
5KPW|1|27|A|1762
5KPW|1|27|G|1763
5KPW|1|27|C|1764
*
5KPW|1|27|G|1988
5KPW|1|27|G|1989
5KPW|1|27|C|1990

Current chains

Chain 27
23S ribosomal RNA

Nearby chains

Chain 26
Small subunit ribosomal RNA; SSU rRNA
Chain B
50S ribosomal protein L3
Chain J
50S ribosomal protein L14
Chain O
50S ribosomal protein L19

Coloring options:


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