J5_5L3P_001

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5L3P|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5L3P_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1167

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5L3P|1|A|C|47
5L3P|1|A|G|48
5L3P|1|A|A|49
5L3P|1|A|U|50
5L3P|1|A|G|51
5L3P|1|A|A|52
5L3P|1|A|A|53
5L3P|1|A|G|54
*
5L3P|1|A|C|116
5L3P|1|A|G|117
5L3P|1|A|A|118
5L3P|1|A|A|119
5L3P|1|A|U|120
5L3P|1|A|G|121
*
5L3P|1|A|C|130
5L3P|1|A|A|131
*
5L3P|1|A|U|148
5L3P|1|A|A|149
5L3P|1|A|U|150
*
5L3P|1|A|A|176
5L3P|1|A|G|177
5L3P|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34