J5_5LKS_003
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGAAGACCCUG*CAGGGAUAACUGGCUUGUG*UUUUUGAUCCUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 62 nucleotides
- Bulged bases
- 5LKS|1|L5|A|3908, 5LKS|1|L5|A|4394, 5LKS|1|L5|U|4437, 5LKS|1|L5|U|4450, 5LKS|1|L5|G|4451, 5LKS|1|L5|U|4452, 5LKS|1|L5|U|4555, 5LKS|1|L5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LKS|1|L5|A|3903
5LKS|1|L5|G|3904
5LKS|1|L5|A|3905
5LKS|1|L5|A|3906
5LKS|1|L5|G|3907
5LKS|1|L5|A|3908
5LKS|1|L5|C|3909
5LKS|1|L5|C|3910
5LKS|1|L5|C|3911
5LKS|1|L5|U|3912
5LKS|1|L5|G|3913
*
5LKS|1|L5|C|4389
5LKS|1|L5|A|4390
5LKS|1|L5|G|4391
5LKS|1|L5|G|4392
5LKS|1|L5|G|4393
5LKS|1|L5|A|4394
5LKS|1|L5|U|4395
5LKS|1|L5|A|4396
5LKS|1|L5|A|4397
5LKS|1|L5|C|4398
5LKS|1|L5|U|4399
5LKS|1|L5|G|4400
5LKS|1|L5|G|4401
5LKS|1|L5|C|4402
5LKS|1|L5|U|4403
5LKS|1|L5|U|4404
5LKS|1|L5|G|4405
5LKS|1|L5|U|4406
5LKS|1|L5|G|4407
*
5LKS|1|L5|U|4435
5LKS|1|L5|U|4436
5LKS|1|L5|U|4437
5LKS|1|L5|U|4438
5LKS|1|L5|U|4439
5LKS|1|L5|G|4440
5LKS|1|L5|A|4441
5LKS|1|L5|U|4442
5LKS|1|L5|C|4443
5LKS|1|L5|C|4444
5LKS|1|L5|U|4445
5LKS|1|L5|U|4446
5LKS|1|L5|C|4447
5LKS|1|L5|G|4448
5LKS|1|L5|A|4449
5LKS|1|L5|U|4450
5LKS|1|L5|G|4451
5LKS|1|L5|U|4452
5LKS|1|L5|C|4453
*
5LKS|1|L5|G|4528
5LKS|1|L5|G|4529
5LKS|1|L5|U|4530
5LKS|1|L5|U|4531
5LKS|1|L5|U|4532
5LKS|1|L5|A|4533
5LKS|1|L5|G|4534
*
5LKS|1|L5|U|4552
5LKS|1|L5|A|4553
5LKS|1|L5|G|4554
5LKS|1|L5|U|4555
5LKS|1|L5|U|4556
5LKS|1|L5|U|4557
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4
- Chain LI
- 60S ribosomal protein L10-like
- Chain LP
- 60S ribosomal protein L17
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- Ribosomal protein L29, isoform CRA_a
Coloring options: