J5_5LKS_005
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 5LKS|1|L8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5LKS_005 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1556
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5LKS|1|L5|G|19
5LKS|1|L5|U|20
5LKS|1|L5|G|21
*
5LKS|1|L8|C|35
5LKS|1|L8|G|36
5LKS|1|L8|A|37
5LKS|1|L8|U|38
5LKS|1|L8|G|39
5LKS|1|L8|A|40
5LKS|1|L8|A|41
5LKS|1|L8|G|42
*
5LKS|1|L8|C|101
5LKS|1|L8|G|102
5LKS|1|L8|A|103
5LKS|1|L8|A|104
5LKS|1|L8|C|105
5LKS|1|L8|G|106
*
5LKS|1|L8|C|113
5LKS|1|L8|G|114
*
5LKS|1|L8|U|136
5LKS|1|L8|A|137
5LKS|1|L8|C|138
Current chains
- Chain L5
- 28S ribosomal RNA
- Chain L8
- 5.8S ribosomal RNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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