J5_5LKS_006

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGUC*GGACCCG*CUGGUUC*GCCGC*GGUGCAGAUC

Length

35 nucleotides

Bulged bases

5LKS|1|L5|C|2289, 5LKS|1|L5|G|2343, 5LKS|1|L5|U|2350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|1335
5LKS|1|L5|G|1336
5LKS|1|L5|A|1337
5LKS|1|L5|G|1338
5LKS|1|L5|U|1339
5LKS|1|L5|C|1340
*
5LKS|1|L5|G|1516
5LKS|1|L5|G|1517
5LKS|1|L5|A|1518
5LKS|1|L5|C|1519
5LKS|1|L5|C|1520
5LKS|1|L5|C|1521
5LKS|1|L5|G|1522
*
5LKS|1|L5|C|1655
5LKS|1|L5|U|1656
5LKS|1|L5|G|1657
5LKS|1|L5|G|1658
5LKS|1|L5|U|1659
5LKS|1|L5|U|1660
5LKS|1|L5|C|1661
*
5LKS|1|L5|G|2288
5LKS|1|L5|C|2289
5LKS|1|L5|C|2290
5LKS|1|L5|G|2291
5LKS|1|L5|C|2292
*
5LKS|1|L5|G|2342
5LKS|1|L5|G|2343
5LKS|1|L5|U|2344
5LKS|1|L5|G|2345
5LKS|1|L5|C|2346
5LKS|1|L5|A|2347
5LKS|1|L5|G|2348
5LKS|1|L5|A|2349
5LKS|1|L5|U|2350
5LKS|1|L5|C|2351

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32

Chain Lr

60S ribosomal protein L28