J5_5LKS_008
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUGAC*GUUUGACUGGGGCGGUACACC*GGUGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 56 nucleotides
- Bulged bases
- 5LKS|1|L5|G|3922, 5LKS|1|L5|U|4194, 5LKS|1|L5|G|4195, 5LKS|1|L5|C|4337, 5LKS|1|L5|A|4376, 5LKS|1|L5|A|4378, 5LKS|1|L5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LKS|1|L5|U|3920
5LKS|1|L5|U|3921
5LKS|1|L5|G|3922
5LKS|1|L5|A|3923
5LKS|1|L5|C|3924
*
5LKS|1|L5|G|4187
5LKS|1|L5|U|4188
5LKS|1|L5|U|4189
5LKS|1|L5|U|4190
5LKS|1|L5|G|4191
5LKS|1|L5|A|4192
5LKS|1|L5|C|4193
5LKS|1|L5|U|4194
5LKS|1|L5|G|4195
5LKS|1|L5|G|4196
5LKS|1|L5|G|4197
5LKS|1|L5|G|4198
5LKS|1|L5|C|4199
5LKS|1|L5|G|4200
5LKS|1|L5|G|4201
5LKS|1|L5|U|4202
5LKS|1|L5|A|4203
5LKS|1|L5|C|4204
5LKS|1|L5|A|4205
5LKS|1|L5|C|4206
5LKS|1|L5|C|4207
*
5LKS|1|L5|G|4225
5LKS|1|L5|G|4226
5LKS|1|L5|U|4227
5LKS|1|L5|G|4228
5LKS|1|L5|U|4229
5LKS|1|L5|C|4230
*
5LKS|1|L5|G|4331
5LKS|1|L5|C|4332
5LKS|1|L5|C|4333
5LKS|1|L5|U|4334
5LKS|1|L5|C|4335
5LKS|1|L5|A|4336
5LKS|1|L5|C|4337
5LKS|1|L5|G|4338
5LKS|1|L5|A|4339
5LKS|1|L5|U|4340
5LKS|1|L5|C|4341
5LKS|1|L5|C|4342
*
5LKS|1|L5|G|4370
5LKS|1|L5|G|4371
5LKS|1|L5|U|4372
5LKS|1|L5|G|4373
5LKS|1|L5|U|4374
5LKS|1|L5|C|4375
5LKS|1|L5|A|4376
5LKS|1|L5|G|4377
5LKS|1|L5|A|4378
5LKS|1|L5|A|4379
5LKS|1|L5|A|4380
5LKS|1|L5|A|4381
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LI
- 60S ribosomal protein L10-like
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- Ribosomal protein L29, isoform CRA_a
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: