J5_5LMO_003

3D structure

PDB id

5LMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

5LMO|1|A|A|109, 5LMO|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5LMO_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0988

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5LMO|1|A|C|58
5LMO|1|A|A|59
5LMO|1|A|A|60
5LMO|1|A|G|61
*
5LMO|1|A|C|106
5LMO|1|A|G|107
5LMO|1|A|G|108
5LMO|1|A|A|109
5LMO|1|A|C|110
5LMO|1|A|G|111
5LMO|1|A|G|112
5LMO|1|A|G|113
*
5LMO|1|A|C|314
5LMO|1|A|A|315
5LMO|1|A|G|316
*
5LMO|1|A|C|337
5LMO|1|A|A|338
5LMO|1|A|C|339
*
5LMO|1|A|G|350
5LMO|1|A|G|351
5LMO|1|A|C|352
5LMO|1|A|A|353
5LMO|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20