J5_5LMP_002

3D structure

PDB id

5LMP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.35 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

5LMP|1|A|A|60, 5LMP|1|A|A|109, 5LMP|1|A|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5LMP_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1012

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5LMP|1|A|C|58
5LMP|1|A|A|59
5LMP|1|A|A|60
5LMP|1|A|G|61
*
5LMP|1|A|C|106
5LMP|1|A|G|107
5LMP|1|A|G|108
5LMP|1|A|A|109
5LMP|1|A|C|110
5LMP|1|A|G|111
5LMP|1|A|G|112
5LMP|1|A|G|113
*
5LMP|1|A|C|314
5LMP|1|A|A|315
5LMP|1|A|G|316
*
5LMP|1|A|C|337
5LMP|1|A|A|338
5LMP|1|A|C|339
*
5LMP|1|A|G|350
5LMP|1|A|G|351
5LMP|1|A|C|352
5LMP|1|A|A|353
5LMP|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20