J5_5LMS_002

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

5LMS|1|A|A|109, 5LMS|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5LMS_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.105

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5LMS|1|A|C|58
5LMS|1|A|A|59
5LMS|1|A|A|60
5LMS|1|A|G|61
*
5LMS|1|A|C|106
5LMS|1|A|G|107
5LMS|1|A|G|108
5LMS|1|A|A|109
5LMS|1|A|C|110
5LMS|1|A|G|111
5LMS|1|A|G|112
5LMS|1|A|G|113
*
5LMS|1|A|C|314
5LMS|1|A|A|315
5LMS|1|A|G|316
*
5LMS|1|A|C|337
5LMS|1|A|A|338
5LMS|1|A|C|339
*
5LMS|1|A|G|350
5LMS|1|A|G|351
5LMS|1|A|C|352
5LMS|1|A|A|353
5LMS|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20