J5_5LMT_001

3D structure

PDB id

5LMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.15 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5LMT_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0846

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5LMT|1|A|C|36
5LMT|1|A|U|37
5LMT|1|A|G|38
5LMT|1|A|G|39
*
5LMT|1|A|C|403
5LMT|1|A|U|404
5LMT|1|A|U|405
5LMT|1|A|G|406
*
5LMT|1|A|C|436
5LMT|1|A|U|437
5LMT|1|A|G|438
5LMT|1|A|A|439
5LMT|1|A|A|441
5LMT|1|A|C|442
*
5LMT|1|A|G|492
5LMT|1|A|G|493
5LMT|1|A|U|494
5LMT|1|A|A|495
5LMT|1|A|A|496
5LMT|1|A|U|498
5LMT|1|A|A|499
5LMT|1|A|G|500
*
5LMT|1|A|C|545
5LMT|1|A|G|546
5LMT|1|A|A|547
5LMT|1|A|G|548

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12