3D structure

PDB id
5LMU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5LMU_001 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0965
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

5LMU|1|A|C|36
5LMU|1|A|U|37
5LMU|1|A|G|38
5LMU|1|A|G|39
*
5LMU|1|A|C|403
5LMU|1|A|U|404
5LMU|1|A|U|405
5LMU|1|A|G|406
*
5LMU|1|A|C|436
5LMU|1|A|U|437
5LMU|1|A|G|438
5LMU|1|A|A|439
5LMU|1|A|A|441
5LMU|1|A|C|442
*
5LMU|1|A|G|492
5LMU|1|A|G|493
5LMU|1|A|U|494
5LMU|1|A|A|495
5LMU|1|A|A|496
5LMU|1|A|U|498
5LMU|1|A|A|499
5LMU|1|A|G|500
*
5LMU|1|A|C|545
5LMU|1|A|G|546
5LMU|1|A|A|547
5LMU|1|A|G|548

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain L
30S ribosomal protein S12

Coloring options:


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