J5_5LZB_001

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5LZB|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5LZB_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1157

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5LZB|1|A|C|47
5LZB|1|A|G|48
5LZB|1|A|A|49
5LZB|1|A|U|50
5LZB|1|A|G|51
5LZB|1|A|A|52
5LZB|1|A|A|53
5LZB|1|A|G|54
*
5LZB|1|A|C|116
5LZB|1|A|G|117
5LZB|1|A|A|118
5LZB|1|A|A|119
5LZB|1|A|U|120
5LZB|1|A|G|121
*
5LZB|1|A|C|130
5LZB|1|A|A|131
*
5LZB|1|A|U|148
5LZB|1|A|A|149
5LZB|1|A|U|150
*
5LZB|1|A|A|176
5LZB|1|A|G|177
5LZB|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34