3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
5LZB|1|A|A|2062, 5LZB|1|A|A|2448, 5LZB|1|A|H2U|2449, 5LZB|1|A|U|2506, 5LZB|1|A|U|2609
QA status
Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LZB|1|A|G|2057
5LZB|1|A|A|2058
5LZB|1|A|A|2059
5LZB|1|A|A|2060
5LZB|1|A|G|2061
5LZB|1|A|A|2062
5LZB|1|A|C|2063
5LZB|1|A|C|2064
*
5LZB|1|A|G|2446
5LZB|1|A|G|2447
5LZB|1|A|A|2448
5LZB|1|A|H2U|2449
5LZB|1|A|A|2450
5LZB|1|A|A|2451
5LZB|1|A|C|2452
5LZB|1|A|A|2453
*
5LZB|1|A|U|2500
5LZB|1|A|C|2501
5LZB|1|A|G|2502
5LZB|1|A|2MA|2503
5LZB|1|A|PSU|2504
5LZB|1|A|G|2505
5LZB|1|A|U|2506
5LZB|1|A|C|2507
*
5LZB|1|A|G|2582
5LZB|1|A|G|2583
5LZB|1|A|U|2584
5LZB|1|A|U|2585
5LZB|1|A|U|2586
5LZB|1|A|A|2587
5LZB|1|A|G|2588
*
5LZB|1|A|C|2606
5LZB|1|A|G|2607
5LZB|1|A|G|2608
5LZB|1|A|U|2609
5LZB|1|A|C|2610
5LZB|1|A|C|2611

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain M
50S ribosomal protein L16
Chain S
50S ribosomal protein L22
Chain v
Transfer RNA; tRNA

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