3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
CUGG*CGUG*CUUUC*GAAG*CAAG
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5LZB_007 not in the Motif Atlas
Homologous match to J5_5J7L_001
Geometric discrepancy: 0.1517
The information below is about J5_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_92941.1
Basepair signature
cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

5LZB|1|a|C|36
5LZB|1|a|U|37
5LZB|1|a|G|38
5LZB|1|a|G|39
*
5LZB|1|a|C|403
5LZB|1|a|G|404
5LZB|1|a|U|405
5LZB|1|a|G|406
*
5LZB|1|a|C|436
5LZB|1|a|U|437
5LZB|1|a|U|438
5LZB|1|a|U|439
5LZB|1|a|C|440
*
5LZB|1|a|G|497
5LZB|1|a|A|498
5LZB|1|a|A|499
5LZB|1|a|G|500
*
5LZB|1|a|C|545
5LZB|1|a|A|546
5LZB|1|a|A|547
5LZB|1|a|G|548

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12
Chain z
Selenocysteine-specific elongation factor

Coloring options:


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