J5_5LZD_010
3D structure
- PDB id
- 5LZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUC*GG*UU*GGG*UG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5LZD_010 not in the Motif Atlas
- Homologous match to J5_3W3S_001
- Geometric discrepancy: 0.5219
- The information below is about J5_3W3S_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59638.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LZD|1|y|C|7
5LZD|1|y|G|8
5LZD|1|y|U|9
5LZD|1|y|C|10
*
5LZD|1|y|G|25
5LZD|1|y|G|26
*
5LZD|1|y|U|44
5LZD|1|y|U|45
*
5LZD|1|y|G|47|||Q
5LZD|1|y|G|48
5LZD|1|y|G|49
*
5LZD|1|y|U|65
5LZD|1|y|G|66
Current chains
- Chain y
- Sec-tRNASec
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain z
- Selenocysteine-specific elongation factor
Coloring options: