Motif J5_40900.1 Version J5_40900.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | break | 5 | 6 | break | 7 | 8 | break | 9 | 10 | 1-10 | 2-3 | 4-5 | 6-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_3W3S_001 | 3W3S | 0.5623 | 3 | B | Selenocysteine transfer RNA | G | 7 | G | 10 | * | C | 25 | C | 26 | * | G | 44 | G | 45 | * | C | 47|||S | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cWW | cWW | cWW |
| 2 | J5_9QRP_001 | 9QRP | 0.0000 | 3 | T | tRNA | G | 7 | C | 10 | * | G | 26 | A | 27 | * | U | 45||A | A | 46||A | * | U | 65 | G | 67 | * | C | 83 | C | 84 | cWW | cWW | ncWW | cWW | cWW |
| 3 | J5_2BTE_002 | 2BTE | 0.9320 | 4 | E | tRNA | G | 7 | G | 10 | * | C | 25 | G | 26 | * | U | 44 | G | 45 | * | C | 47|||E | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUG*CC*GG*CGG*CC | 1 |
| GUGC*GA*UA*UCG*CC | 1 |
| GUGG*CG*UG*CGUG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU***G* | 1 |
| UG***C* | 1 |
| UG***GU* | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.56 | Avg 0.56 | Max 1.04
Coloring options: