J5_5LZY_009

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

5LZY|1|9|G|126, 5LZY|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZY|1|9|G|123
5LZY|1|9|U|124
5LZY|1|9|C|125
5LZY|1|9|G|126
5LZY|1|9|C|127
5LZY|1|9|U|128
5LZY|1|9|C|129
*
5LZY|1|9|G|183
5LZY|1|9|G|184
5LZY|1|9|G|185
*
5LZY|1|9|U|214
5LZY|1|9|G|215
*
5LZY|1|9|C|310
5LZY|1|9|C|311
5LZY|1|9|G|312
*
5LZY|1|9|C|337
5LZY|1|9|G|338
5LZY|1|9|A|339
5LZY|1|9|C|340
5LZY|1|9|C|341

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain GG

40S ribosomal protein S6

Chain II

eS8