J5_5M1J_004
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5M1J|1|14|G|2116, 5M1J|1|14|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5M1J_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.096
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5M1J|1|14|G|1906
5M1J|1|14|C|1907
5M1J|1|14|A|1908
5M1J|1|14|A|1909
5M1J|1|14|A|1910
5M1J|1|14|A|1911
5M1J|1|14|U|1912
5M1J|1|14|A|1913
5M1J|1|14|G|1914
*
5M1J|1|14|U|1938
5M1J|1|14|G|1939
*
5M1J|1|14|U|2109
5M1J|1|14|G|2110
*
5M1J|1|14|C|2114
5M1J|1|14|G|2115
5M1J|1|14|G|2116
5M1J|1|14|A|2117
5M1J|1|14|C|2118
5M1J|1|14|A|2119
5M1J|1|14|A|2120
5M1J|1|14|G|2121
5M1J|1|14|G|2122
*
5M1J|1|14|C|2331
5M1J|1|14|A|2332
5M1J|1|14|C|2333
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain 22
- Small subunit ribosomal RNA; SSU rRNA
- Chain B5
- 60S ribosomal protein L3
- Chain R5
- 60S ribosomal protein L19-A
- Chain V5
- 60S ribosomal protein L23-A
- Chain W5
- 60S ribosomal protein L24-A
Coloring options: