J5_5M1J_005

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

5M1J|1|14|A|2404, 5M1J|1|14|A|2817, 5M1J|1|14|U|2873, 5M1J|1|14|U|2978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|14|A|2399
5M1J|1|14|G|2400
5M1J|1|14|A|2401
5M1J|1|14|A|2402
5M1J|1|14|G|2403
5M1J|1|14|A|2404
5M1J|1|14|C|2405
5M1J|1|14|C|2406
*
5M1J|1|14|G|2815
5M1J|1|14|G|2816
5M1J|1|14|A|2817
5M1J|1|14|U|2818
5M1J|1|14|A|2819
5M1J|1|14|A|2820
5M1J|1|14|C|2821
5M1J|1|14|U|2822
5M1J|1|14|G|2823
*
5M1J|1|14|C|2867
5M1J|1|14|U|2868
5M1J|1|14|U|2869
5M1J|1|14|C|2870
5M1J|1|14|G|2871
5M1J|1|14|A|2872
5M1J|1|14|U|2873
5M1J|1|14|G|2874
5M1J|1|14|U|2875
5M1J|1|14|C|2876
*
5M1J|1|14|G|2951
5M1J|1|14|G|2952
5M1J|1|14|U|2953
5M1J|1|14|U|2954
5M1J|1|14|U|2955
5M1J|1|14|A|2956
5M1J|1|14|G|2957
*
5M1J|1|14|U|2975
5M1J|1|14|A|2976
5M1J|1|14|G|2977
5M1J|1|14|U|2978
5M1J|1|14|U|2979
5M1J|1|14|U|2980

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain A5

60S ribosomal protein L2-A

Chain B5

60S ribosomal protein L3

Chain C5

60S ribosomal protein L4-A

Chain b5

60S ribosomal protein L29