J5_5M1J_007

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5M1J|1|22|A|541, 5M1J|1|22|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|22|C|31
5M1J|1|22|U|32
5M1J|1|22|U|33
5M1J|1|22|G|34
5M1J|1|22|U|35
*
5M1J|1|22|A|473
5M1J|1|22|A|474
5M1J|1|22|A|475
5M1J|1|22|U|476
5M1J|1|22|A|477
5M1J|1|22|A|478
5M1J|1|22|C|479
*
5M1J|1|22|G|509
5M1J|1|22|G|510
5M1J|1|22|A|511
5M1J|1|22|A|512
5M1J|1|22|U|513
5M1J|1|22|G|514
5M1J|1|22|A|515
5M1J|1|22|G|516
*
5M1J|1|22|C|536
5M1J|1|22|G|537
5M1J|1|22|A|538
5M1J|1|22|G|539
5M1J|1|22|G|540
5M1J|1|22|A|541
5M1J|1|22|A|542
5M1J|1|22|C|543
5M1J|1|22|A|544
5M1J|1|22|A|545
5M1J|1|22|U|546
*
5M1J|1|22|A|592
5M1J|1|22|U|593
5M1J|1|22|A|594
5M1J|1|22|G|595

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain J2

40S ribosomal protein S9-A

Chain X2

40S ribosomal protein S23-A

Chain e2

40S ribosomal protein S30-A