J5_5M1J_011
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AACUUUG*UUUCCUUC*GACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAUU
- Length
- 49 nucleotides
- Bulged bases
- 5M1J|1|22|U|638, 5M1J|1|22|U|639, 5M1J|1|22|U|694, 5M1J|1|22|C|696, 5M1J|1|22|C|697, 5M1J|1|22|A|811, 5M1J|1|22|U|813, 5M1J|1|22|G|815, 5M1J|1|22|U|820, 5M1J|1|22|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5M1J|1|22|A|635
5M1J|1|22|A|636
5M1J|1|22|C|637
5M1J|1|22|U|638
5M1J|1|22|U|639
5M1J|1|22|U|640
5M1J|1|22|G|641
*
5M1J|1|22|U|693
5M1J|1|22|U|694
5M1J|1|22|U|695
5M1J|1|22|C|696
5M1J|1|22|C|697
5M1J|1|22|U|698
5M1J|1|22|U|699
5M1J|1|22|C|700
*
5M1J|1|22|G|739
5M1J|1|22|A|740
5M1J|1|22|C|741
5M1J|1|22|U|742
5M1J|1|22|U|743
5M1J|1|22|U|744
*
5M1J|1|22|A|807
5M1J|1|22|U|808
5M1J|1|22|A|809
5M1J|1|22|G|810
5M1J|1|22|A|811
5M1J|1|22|A|812
5M1J|1|22|U|813
5M1J|1|22|A|814
5M1J|1|22|G|815
5M1J|1|22|G|816
5M1J|1|22|A|817
5M1J|1|22|C|818
5M1J|1|22|G|819
5M1J|1|22|U|820
5M1J|1|22|U|821
5M1J|1|22|U|822
*
5M1J|1|22|A|850
5M1J|1|22|U|851
5M1J|1|22|C|852
5M1J|1|22|G|853
5M1J|1|22|U|854
5M1J|1|22|A|855
5M1J|1|22|A|856
5M1J|1|22|U|857
5M1J|1|22|G|858
5M1J|1|22|A|859
5M1J|1|22|U|860
5M1J|1|22|U|861
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain E2
- 40S ribosomal protein S4-A
- Chain H2
- 40S ribosomal protein S7-A
- Chain L2
- 40S ribosomal protein S11-A
- Chain N2
- 40S ribosomal protein S13
- Chain R5
- 60S ribosomal protein L19-A
- Chain W2
- 40S ribosomal protein S22-A
Coloring options: