Loop J5_5M1J

3D structure

PDB id: 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
Description: Nonstop ribosomal complex bound with Dom34 and Hbs1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGGUAUAAC*GCUAAUACAUGCUUAAAA*UG*CGAAU*AUGGUU
Length: 57 nucleotides
Bulged bases: 5M1J|1|22|U|128, 5M1J|1|22|U|132, 5M1J|1|22|U|133, 5M1J|1|22|U|134, 5M1J|1|22|A|135, 5M1J|1|22|A|140, 5M1J|1|22|U|170
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5M1J|1|22|A|124
5M1J|1|22|U|125
5M1J|1|22|A|126
5M1J|1|22|G|127
5M1J|1|22|U|128
5M1J|1|22|U|129
5M1J|1|22|C|130
5M1J|1|22|C|131
5M1J|1|22|U|132
5M1J|1|22|U|133
5M1J|1|22|U|134
5M1J|1|22|A|135
5M1J|1|22|C|136
5M1J|1|22|U|137
5M1J|1|22|A|138
5M1J|1|22|C|139
5M1J|1|22|A|140
5M1J|1|22|U|141
5M1J|1|22|G|142
5M1J|1|22|G|143
5M1J|1|22|U|144
5M1J|1|22|A|145
5M1J|1|22|U|146
5M1J|1|22|A|147
5M1J|1|22|A|148
5M1J|1|22|C|149
*
5M1J|1|22|G|165
5M1J|1|22|C|166
5M1J|1|22|U|167
5M1J|1|22|A|168
5M1J|1|22|A|169
5M1J|1|22|U|170
5M1J|1|22|A|171
5M1J|1|22|C|172
5M1J|1|22|A|173
5M1J|1|22|U|174
5M1J|1|22|G|175
5M1J|1|22|C|176
5M1J|1|22|U|177
5M1J|1|22|U|178
5M1J|1|22|A|179
5M1J|1|22|A|180
5M1J|1|22|A|181
5M1J|1|22|A|182
*
5M1J|1|22|U|203
5M1J|1|22|G|204
*
5M1J|1|22|C|263
5M1J|1|22|G|264
5M1J|1|22|A|265
5M1J|1|22|A|266
5M1J|1|22|U|267
*
5M1J|1|22|A|288
5M1J|1|22|U|289
5M1J|1|22|G|290
5M1J|1|22|G|291
5M1J|1|22|U|292
5M1J|1|22|U|293

Current chains

Chain 22: 18S ribosomal RNA

Nearby chains

Chain E2: 40S ribosomal protein S4-A
Chain G2: 40S ribosomal protein S6-A
Chain I2: 40S ribosomal protein S8-A
Chain W5: 60S ribosomal protein L24-A
Chain Y2: 40S ribosomal protein S24-A

J5_5M1J_013