J5_5MC6_001

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5MC6|1|2|A|541, 5MC6|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|2|C|31
5MC6|1|2|U|32
5MC6|1|2|U|33
5MC6|1|2|G|34
5MC6|1|2|U|35
*
5MC6|1|2|A|473
5MC6|1|2|A|474
5MC6|1|2|A|475
5MC6|1|2|U|476
5MC6|1|2|A|477
5MC6|1|2|A|478
5MC6|1|2|C|479
*
5MC6|1|2|G|509
5MC6|1|2|G|510
5MC6|1|2|A|511
5MC6|1|2|A|512
5MC6|1|2|U|513
5MC6|1|2|G|514
5MC6|1|2|A|515
5MC6|1|2|G|516
*
5MC6|1|2|C|536
5MC6|1|2|G|537
5MC6|1|2|A|538
5MC6|1|2|G|539
5MC6|1|2|G|540
5MC6|1|2|A|541
5MC6|1|2|A|542
5MC6|1|2|C|543
5MC6|1|2|A|544
5MC6|1|2|A|545
5MC6|1|2|U|546
*
5MC6|1|2|A|592
5MC6|1|2|U|593
5MC6|1|2|A|594
5MC6|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A