J5_5MC6_004

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

5MC6|1|2|U|639, 5MC6|1|2|U|694, 5MC6|1|2|C|696, 5MC6|1|2|C|697, 5MC6|1|2|U|813, 5MC6|1|2|G|815, 5MC6|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|2|A|636
5MC6|1|2|C|637
5MC6|1|2|U|638
5MC6|1|2|U|639
5MC6|1|2|U|640
5MC6|1|2|G|641
*
5MC6|1|2|U|693
5MC6|1|2|U|694
5MC6|1|2|U|695
5MC6|1|2|C|696
5MC6|1|2|C|697
5MC6|1|2|U|698
*
5MC6|1|2|A|740
5MC6|1|2|C|741
5MC6|1|2|U|742
5MC6|1|2|U|743
5MC6|1|2|U|744
*
5MC6|1|2|A|807
5MC6|1|2|U|808
5MC6|1|2|A|809
5MC6|1|2|G|810
5MC6|1|2|A|811
5MC6|1|2|A|812
5MC6|1|2|U|813
5MC6|1|2|A|814
5MC6|1|2|G|815
5MC6|1|2|G|816
5MC6|1|2|A|817
*
5MC6|1|2|U|854
5MC6|1|2|A|855
5MC6|1|2|A|856
5MC6|1|2|U|857
5MC6|1|2|G|858
5MC6|1|2|A|859
5MC6|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain U

40S ribosomal protein S7-A

Chain X

40S ribosomal protein S11-A

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A