J5_5MC6_009
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 5MC6|1|BQ|A|2404, 5MC6|1|BQ|A|2817, 5MC6|1|BQ|U|2873, 5MC6|1|BQ|U|2978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MC6|1|BQ|A|2399
5MC6|1|BQ|G|2400
5MC6|1|BQ|A|2401
5MC6|1|BQ|A|2402
5MC6|1|BQ|G|2403
5MC6|1|BQ|A|2404
5MC6|1|BQ|C|2405
5MC6|1|BQ|C|2406
*
5MC6|1|BQ|G|2815
5MC6|1|BQ|G|2816
5MC6|1|BQ|A|2817
5MC6|1|BQ|U|2818
5MC6|1|BQ|A|2819
5MC6|1|BQ|A|2820
5MC6|1|BQ|C|2821
5MC6|1|BQ|U|2822
5MC6|1|BQ|G|2823
*
5MC6|1|BQ|C|2867
5MC6|1|BQ|U|2868
5MC6|1|BQ|U|2869
5MC6|1|BQ|C|2870
5MC6|1|BQ|G|2871
5MC6|1|BQ|A|2872
5MC6|1|BQ|U|2873
5MC6|1|BQ|G|2874
5MC6|1|BQ|U|2875
5MC6|1|BQ|C|2876
*
5MC6|1|BQ|G|2951
5MC6|1|BQ|G|2952
5MC6|1|BQ|U|2953
5MC6|1|BQ|U|2954
5MC6|1|BQ|U|2955
5MC6|1|BQ|A|2956
5MC6|1|BQ|G|2957
*
5MC6|1|BQ|U|2975
5MC6|1|BQ|A|2976
5MC6|1|BQ|G|2977
5MC6|1|BQ|U|2978
5MC6|1|BQ|U|2979
5MC6|1|BQ|U|2980
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AV
- 60S ribosomal protein L29
- Chain AW
- 60S ribosomal protein L2-A
- Chain AX
- 60S ribosomal protein L17-A
- Chain BA
- 60S ribosomal protein L3
- Chain BD
- 60S ribosomal protein L10
- Chain BE
- 60S ribosomal protein L4-A
- Chain BT
- Eukaryotic translation initiation factor 5A-1
- Chain m
- Transfer RNA; tRNA
- Chain n
- Transfer RNA; tRNA
Coloring options: