J5_5MC6_011

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

5MC6|1|2|U|128, 5MC6|1|2|C|130, 5MC6|1|2|C|131, 5MC6|1|2|U|132, 5MC6|1|2|U|133, 5MC6|1|2|U|134, 5MC6|1|2|A|135, 5MC6|1|2|C|136, 5MC6|1|2|U|137, 5MC6|1|2|A|140, 5MC6|1|2|U|141, 5MC6|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|2|A|124
5MC6|1|2|U|125
5MC6|1|2|A|126
5MC6|1|2|G|127
5MC6|1|2|U|128
5MC6|1|2|U|129
5MC6|1|2|C|130
5MC6|1|2|C|131
5MC6|1|2|U|132
5MC6|1|2|U|133
5MC6|1|2|U|134
5MC6|1|2|A|135
5MC6|1|2|C|136
5MC6|1|2|U|137
5MC6|1|2|A|138
5MC6|1|2|C|139
5MC6|1|2|A|140
5MC6|1|2|U|141
5MC6|1|2|G|142
5MC6|1|2|G|143
*
5MC6|1|2|C|172
5MC6|1|2|A|173
5MC6|1|2|U|174
5MC6|1|2|G|175
5MC6|1|2|C|176
5MC6|1|2|U|177
5MC6|1|2|U|178
5MC6|1|2|A|179
5MC6|1|2|A|180
5MC6|1|2|A|181
5MC6|1|2|A|182
*
5MC6|1|2|U|203
5MC6|1|2|G|204
*
5MC6|1|2|C|263
5MC6|1|2|G|264
5MC6|1|2|A|265
*
5MC6|1|2|U|289
5MC6|1|2|G|290
5MC6|1|2|G|291
5MC6|1|2|U|292
5MC6|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A