J5_5MEI_005

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

5MEI|1|1|A|2404, 5MEI|1|1|A|2817, 5MEI|1|1|U|2818, 5MEI|1|1|G|2874, 5MEI|1|1|U|2875, 5MEI|1|1|U|2978, 5MEI|1|1|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|1|A|2399
5MEI|1|1|G|2400
5MEI|1|1|A|2401
5MEI|1|1|A|2402
5MEI|1|1|G|2403
5MEI|1|1|A|2404
5MEI|1|1|C|2405
5MEI|1|1|C|2406
*
5MEI|1|1|G|2815
5MEI|1|1|G|2816
5MEI|1|1|A|2817
5MEI|1|1|U|2818
5MEI|1|1|A|2819
5MEI|1|1|A|2820
5MEI|1|1|C|2821
5MEI|1|1|U|2822
5MEI|1|1|G|2823
*
5MEI|1|1|C|2867
5MEI|1|1|U|2868
5MEI|1|1|U|2869
5MEI|1|1|C|2870
5MEI|1|1|G|2871
5MEI|1|1|A|2872
5MEI|1|1|U|2873
5MEI|1|1|G|2874
5MEI|1|1|U|2875
5MEI|1|1|C|2876
*
5MEI|1|1|G|2951
5MEI|1|1|G|2952
5MEI|1|1|U|2953
5MEI|1|1|U|2954
5MEI|1|1|U|2955
5MEI|1|1|A|2956
5MEI|1|1|G|2957
*
5MEI|1|1|U|2975
5MEI|1|1|A|2976
5MEI|1|1|G|2977
5MEI|1|1|U|2978
5MEI|1|1|U|2979
5MEI|1|1|U|2980

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L29

Chain j

60S ribosomal protein L2-A

Chain k

60S ribosomal protein L3

Chain l

60S ribosomal protein L4-A