J5_5MEI_014
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 35 nucleotides
- Bulged bases
- 5MEI|1|A|U|638, 5MEI|1|A|U|639, 5MEI|1|A|C|696, 5MEI|1|A|C|697, 5MEI|1|A|U|813, 5MEI|1|A|G|815, 5MEI|1|A|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MEI|1|A|A|636
5MEI|1|A|C|637
5MEI|1|A|U|638
5MEI|1|A|U|639
5MEI|1|A|U|640
5MEI|1|A|G|641
*
5MEI|1|A|U|693
5MEI|1|A|U|694
5MEI|1|A|U|695
5MEI|1|A|C|696
5MEI|1|A|C|697
5MEI|1|A|U|698
*
5MEI|1|A|A|740
5MEI|1|A|C|741
5MEI|1|A|U|742
5MEI|1|A|U|743
5MEI|1|A|U|744
*
5MEI|1|A|A|807
5MEI|1|A|U|808
5MEI|1|A|A|809
5MEI|1|A|G|810
5MEI|1|A|A|811
5MEI|1|A|A|812
5MEI|1|A|U|813
5MEI|1|A|A|814
5MEI|1|A|G|815
5MEI|1|A|G|816
5MEI|1|A|A|817
*
5MEI|1|A|U|854
5MEI|1|A|A|855
5MEI|1|A|A|856
5MEI|1|A|U|857
5MEI|1|A|G|858
5MEI|1|A|A|859
5MEI|1|A|U|860
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S7-A
- Chain M
- 40S ribosomal protein S11-A
- Chain O
- 40S ribosomal protein S13
- Chain X
- 40S ribosomal protein S22-A
- Chain z
- 60S ribosomal protein L19-A
Coloring options: