J5_5MEI_021

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

5MEI|1|A|U|128, 5MEI|1|A|U|132, 5MEI|1|A|C|136, 5MEI|1|A|U|137, 5MEI|1|A|A|140, 5MEI|1|A|U|141, 5MEI|1|A|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|A|A|124
5MEI|1|A|U|125
5MEI|1|A|A|126
5MEI|1|A|G|127
5MEI|1|A|U|128
5MEI|1|A|U|129
5MEI|1|A|C|130
5MEI|1|A|C|131
5MEI|1|A|U|132
5MEI|1|A|U|133
5MEI|1|A|U|134
5MEI|1|A|A|135
5MEI|1|A|C|136
5MEI|1|A|U|137
5MEI|1|A|A|138
5MEI|1|A|C|139
5MEI|1|A|A|140
5MEI|1|A|U|141
5MEI|1|A|G|142
5MEI|1|A|G|143
*
5MEI|1|A|C|172
5MEI|1|A|A|173
5MEI|1|A|U|174
5MEI|1|A|G|175
5MEI|1|A|C|176
5MEI|1|A|U|177
5MEI|1|A|U|178
5MEI|1|A|A|179
5MEI|1|A|A|180
5MEI|1|A|A|181
5MEI|1|A|A|182
*
5MEI|1|A|U|203
5MEI|1|A|G|204
*
5MEI|1|A|C|263
5MEI|1|A|G|264
5MEI|1|A|A|265
*
5MEI|1|A|U|289
5MEI|1|A|G|290
5MEI|1|A|G|291
5MEI|1|A|U|292
5MEI|1|A|U|293

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain H

40S ribosomal protein S6-A

Chain J

40S ribosomal protein S8-A