J5_5MLC_004
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCAAAAUAG*UG*UC*GUGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5MLC|1|A|G|1768, 5MLC|1|A|G|1773
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MLC_004 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.1299
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5MLC|1|A|G|1710
5MLC|1|A|C|1711
5MLC|1|A|A|1712
5MLC|1|A|A|1713
5MLC|1|A|A|1714
5MLC|1|A|A|1715
5MLC|1|A|U|1716
5MLC|1|A|A|1717
5MLC|1|A|G|1718
*
5MLC|1|A|U|1742
5MLC|1|A|G|1743
*
5MLC|1|A|U|1761
5MLC|1|A|C|1762
*
5MLC|1|A|G|1766
5MLC|1|A|U|1767
5MLC|1|A|G|1768
5MLC|1|A|A|1769
5MLC|1|A|C|1770
5MLC|1|A|C|1771
5MLC|1|A|A|1772
5MLC|1|A|G|1773
5MLC|1|A|G|1774
*
5MLC|1|A|C|2002
5MLC|1|A|A|2003
5MLC|1|A|C|2004
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain C
- 4.8S ribosomal RNA, chloroplastic
- Chain E
- 50S ribosomal protein L3, chloroplastic
- Chain M
- 50S ribosomal protein L14, chloroplastic
- Chain R
- 50S ribosomal protein L19, chloroplastic
Coloring options: