J5_5MMI_004
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5MMI|1|A|U|1276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MMI_004 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.0981
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5MMI|1|A|C|594
5MMI|1|A|G|595
5MMI|1|A|A|596
5MMI|1|A|C|597
5MMI|1|A|U|598
5MMI|1|A|C|599
*
5MMI|1|A|G|679
5MMI|1|A|G|680
5MMI|1|A|A|681
5MMI|1|A|C|682
*
5MMI|1|A|G|820
5MMI|1|A|U|821
5MMI|1|A|U|822
5MMI|1|A|C|823
*
5MMI|1|A|G|1216
5MMI|1|A|C|1217
*
5MMI|1|A|G|1271
5MMI|1|A|A|1272
5MMI|1|A|G|1273
5MMI|1|A|A|1274
5MMI|1|A|A|1275
5MMI|1|A|U|1276
5MMI|1|A|G|1277
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L35, chloroplastic
- Chain E
- plastid ribosomal protein uL4c
- Chain M
- plastid ribosomal protein uL15c
- Chain R
- 50S ribosomal protein L20, chloroplastic
- Chain S
- 50S ribosomal protein L21, chloroplastic
Coloring options: