J5_5MMI_008
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAAGAC*GAUAACAG*CCUCGAUGUC*GGGUUCAG*CGGUCC
- Length
- 39 nucleotides
- Bulged bases
- 5MMI|1|A|A|2074, 5MMI|1|A|A|2465, 5MMI|1|A|U|2466, 5MMI|1|A|G|2519, 5MMI|1|A|U|2602, 5MMI|1|A|U|2626, 5MMI|1|A|C|2627
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MMI|1|A|G|2071
5MMI|1|A|A|2072
5MMI|1|A|A|2073
5MMI|1|A|A|2074
5MMI|1|A|G|2075
5MMI|1|A|A|2076
5MMI|1|A|C|2077
*
5MMI|1|A|G|2464
5MMI|1|A|A|2465
5MMI|1|A|U|2466
5MMI|1|A|A|2467
5MMI|1|A|A|2468
5MMI|1|A|C|2469
5MMI|1|A|A|2470
5MMI|1|A|G|2471
*
5MMI|1|A|C|2515
5MMI|1|A|C|2516
5MMI|1|A|U|2517
5MMI|1|A|C|2518
5MMI|1|A|G|2519
5MMI|1|A|A|2520
5MMI|1|A|U|2521
5MMI|1|A|G|2522
5MMI|1|A|U|2523
5MMI|1|A|C|2524
*
5MMI|1|A|G|2598
5MMI|1|A|G|2599
5MMI|1|A|G|2600
5MMI|1|A|U|2601
5MMI|1|A|U|2602
5MMI|1|A|C|2603
5MMI|1|A|A|2604
5MMI|1|A|G|2605
*
5MMI|1|A|C|2623
5MMI|1|A|G|2624
5MMI|1|A|G|2625
5MMI|1|A|U|2626
5MMI|1|A|C|2627
5MMI|1|A|C|2628
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L32, chloroplastic
- Chain C
- 50S ribosomal protein L2, chloroplastic
- Chain D
- plastid ribosomal protein uL3c
- Chain M
- plastid ribosomal protein uL15c
- Chain N
- 50S ribosomal protein L16, chloroplastic
- Chain T
- 50S ribosomal protein L22, chloroplastic
Coloring options: