J5_5NCO_004

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

5NCO|1|A|U|1758, 5NCO|1|A|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5NCO_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0728

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5NCO|1|A|G|1674
5NCO|1|A|C|1675
5NCO|1|A|A|1676
5NCO|1|A|A|1677
5NCO|1|A|A|1678
5NCO|1|A|A|1679
5NCO|1|A|U|1680
5NCO|1|A|G|1681
5NCO|1|A|G|1682
*
5NCO|1|A|C|1706
5NCO|1|A|G|1707
*
5NCO|1|A|U|1751
5NCO|1|A|C|1752
*
5NCO|1|A|G|1756
5NCO|1|A|A|1757
5NCO|1|A|U|1758
5NCO|1|A|A|1759
5NCO|1|A|C|1760
5NCO|1|A|C|1761
5NCO|1|A|A|1762
5NCO|1|A|G|1763
5NCO|1|A|C|1764
*
5NCO|1|A|G|1988
5NCO|1|A|G|1989
5NCO|1|A|C|1990

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19