J5_5ND8_003
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UG*CA
- Length
- 15 nucleotides
- Bulged bases
- 5ND8|1|A|U|605
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5ND8_003 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.1418
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5ND8|1|A|U|576
5ND8|1|A|A|577
5ND8|1|A|G|578
*
5ND8|1|A|C|603
5ND8|1|A|G|604
5ND8|1|A|U|605
5ND8|1|A|G|606
5ND8|1|A|C|607
*
5ND8|1|A|G|620
5ND8|1|A|A|621
5ND8|1|A|A|622
*
5ND8|1|A|U|1299
5ND8|1|A|G|1300
*
5ND8|1|A|C|2044
5ND8|1|A|A|2045
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
- Chain V
- 50S ribosomal protein L22
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