J5_5NDJ_001
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NDJ_001 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0784
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5NDJ|1|13|C|682
5NDJ|1|13|U|683
5NDJ|1|13|G|684
5NDJ|1|13|G|685
*
5NDJ|1|13|C|1044
5NDJ|1|13|U|1045
5NDJ|1|13|U|1046
5NDJ|1|13|G|1047
*
5NDJ|1|13|C|1077
5NDJ|1|13|U|1078
5NDJ|1|13|G|1079
5NDJ|1|13|A|1080
5NDJ|1|13|A|1081
5NDJ|1|13|C|1082
*
5NDJ|1|13|G|1122
5NDJ|1|13|G|1123
5NDJ|1|13|U|1124
5NDJ|1|13|A|1125
5NDJ|1|13|A|1126
5NDJ|1|13|U|1127
5NDJ|1|13|A|1128
5NDJ|1|13|G|1129
*
5NDJ|1|13|C|1174
5NDJ|1|13|G|1175
5NDJ|1|13|A|1176
5NDJ|1|13|G|1177
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3E
- 30S ribosomal protein S4
- Chain 3I
- 30S ribosomal protein S12
- Chain 69
- 50S ribosomal protein L9
Coloring options: