J5_5NDJ_002
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5NDJ|1|13|A|748, 5NDJ|1|13|C|993
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NDJ_002 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0768
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NDJ|1|13|C|704
5NDJ|1|13|A|705
5NDJ|1|13|A|706
5NDJ|1|13|G|707
*
5NDJ|1|13|C|745
5NDJ|1|13|G|746
5NDJ|1|13|G|747
5NDJ|1|13|A|748
5NDJ|1|13|C|749
5NDJ|1|13|G|750
5NDJ|1|13|G|751
5NDJ|1|13|G|752
*
5NDJ|1|13|C|955
5NDJ|1|13|A|956
5NDJ|1|13|G|957
*
5NDJ|1|13|C|978
5NDJ|1|13|A|979
5NDJ|1|13|C|980
*
5NDJ|1|13|G|991
5NDJ|1|13|G|992
5NDJ|1|13|C|993
5NDJ|1|13|A|994
5NDJ|1|13|G|995
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 68
- 50S ribosomal protein L14
- Chain 7I
- 30S ribosomal protein S16
- Chain B8
- 50S ribosomal protein L19
- Chain BI
- 30S ribosomal protein S20
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