J5_5NDK_008
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 5NDK|1|14|A|2087, 5NDK|1|14|A|2463, 5NDK|1|14|U|2464, 5NDK|1|14|U|2624
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDK|1|14|A|2082
5NDK|1|14|A|2083
5NDK|1|14|A|2084
5NDK|1|14|A|2085
5NDK|1|14|G|2086
5NDK|1|14|A|2087
5NDK|1|14|C|2088
5NDK|1|14|C|2089
*
5NDK|1|14|G|2461
5NDK|1|14|G|2462
5NDK|1|14|A|2463
5NDK|1|14|U|2464
5NDK|1|14|A|2465
5NDK|1|14|A|2466
5NDK|1|14|C|2467
5NDK|1|14|A|2468
*
5NDK|1|14|U|2515
5NDK|1|14|C|2516
5NDK|1|14|G|2517
5NDK|1|14|A|2518
5NDK|1|14|U|2519
5NDK|1|14|G|2520
5NDK|1|14|U|2521
5NDK|1|14|C|2522
*
5NDK|1|14|G|2597
5NDK|1|14|G|2598
5NDK|1|14|U|2599
5NDK|1|14|U|2600
5NDK|1|14|C|2601
5NDK|1|14|A|2602
5NDK|1|14|G|2603
*
5NDK|1|14|C|2621
5NDK|1|14|G|2622
5NDK|1|14|G|2623
5NDK|1|14|U|2624
5NDK|1|14|C|2625
5NDK|1|14|U|2626
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L2
- Chain 29
- 50S ribosomal protein L3
- Chain 35
- 50S ribosomal protein L15
- Chain 39
- 50S ribosomal protein L4
- Chain 45
- 50S ribosomal protein L16
- Chain A5
- 50S ribosomal protein L22
- Chain E5
- 50S ribosomal protein L27
- Chain J5
- 50S ribosomal protein L32
- Chain W4
- Transfer RNA; tRNA
- Chain X4
- Transfer RNA; tRNA
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