J5_5NG8_005
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5NG8|1|AA|U|2103, 5NG8|1|AA|G|2455, 5NG8|1|AA|G|2456, 5NG8|1|AA|A|2457, 5NG8|1|AA|U|2458, 5NG8|1|AA|A|2459, 5NG8|1|AA|A|2460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NG8_005 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.4233
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NG8|1|AA|U|2101
5NG8|1|AA|U|2102
5NG8|1|AA|U|2103
5NG8|1|AA|A|2104
*
5NG8|1|AA|U|2270
5NG8|1|AA|U|2271
5NG8|1|AA|U|2272
5NG8|1|AA|G|2273
*
5NG8|1|AA|C|2285
5NG8|1|AA|G|2286
*
5NG8|1|AA|C|2308
5NG8|1|AA|G|2309
*
5NG8|1|AA|C|2454
5NG8|1|AA|G|2455
5NG8|1|AA|G|2456
5NG8|1|AA|A|2457
5NG8|1|AA|U|2458
5NG8|1|AA|A|2459
5NG8|1|AA|A|2460
5NG8|1|AA|A|2461
5NG8|1|AA|A|2462
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A3
- 50S ribosomal protein L35
- Chain AC
- 50S ribosomal protein L2
- Chain AJ
- 50S ribosomal protein L15
- Chain AU
- 50S ribosomal protein L27
- Chain AV
- 50S ribosomal protein L28
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