J5_5NG8_010
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5NG8|1|BA|G|1785, 5NG8|1|BA|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NG8_010 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.148
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
5NG8|1|BA|G|1718
5NG8|1|BA|C|1719
5NG8|1|BA|A|1720
5NG8|1|BA|A|1721
5NG8|1|BA|A|1722
5NG8|1|BA|A|1723
5NG8|1|BA|U|1724
5NG8|1|BA|G|1725
5NG8|1|BA|A|1726
*
5NG8|1|BA|U|1750
5NG8|1|BA|G|1751
*
5NG8|1|BA|C|1778
5NG8|1|BA|C|1779
*
5NG8|1|BA|G|1783
5NG8|1|BA|U|1784
5NG8|1|BA|G|1785
5NG8|1|BA|A|1786
5NG8|1|BA|A|1787
5NG8|1|BA|U|1788
5NG8|1|BA|A|1789
5NG8|1|BA|G|1790
5NG8|1|BA|G|1791
*
5NG8|1|BA|C|2015
5NG8|1|BA|A|2016
5NG8|1|BA|C|2017
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BD
- 50S ribosomal protein L3
- Chain BI
- 50S ribosomal protein L14
- Chain BN
- 50S ribosomal protein L19
- Chain Ba
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: