J5_5NGM_002
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5NGM|1|AA|U|1293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NGM_002 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.0692
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5NGM|1|AA|C|627
5NGM|1|AA|G|628
5NGM|1|AA|A|629
5NGM|1|AA|G|630
5NGM|1|AA|U|631
5NGM|1|AA|U|632
*
5NGM|1|AA|A|713
5NGM|1|AA|G|714
5NGM|1|AA|A|715
5NGM|1|AA|C|716
*
5NGM|1|AA|G|854
5NGM|1|AA|U|855
5NGM|1|AA|U|856
5NGM|1|AA|C|857
*
5NGM|1|AA|G|1234
5NGM|1|AA|C|1235
*
5NGM|1|AA|G|1288
5NGM|1|AA|A|1289
5NGM|1|AA|G|1290
5NGM|1|AA|A|1291
5NGM|1|AA|A|1292
5NGM|1|AA|U|1293
5NGM|1|AA|G|1294
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A3
- 50S ribosomal protein L35
- Chain AE
- 50S ribosomal protein L4
- Chain AJ
- 50S ribosomal protein L15
- Chain AO
- 50S ribosomal protein L20
- Chain AP
- 50S ribosomal protein L21
Coloring options: