J5_5NGM_006

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGC*GCGUGAG*CUCUGUUA*UCAGAAAGCCAC*GUGGCAAG

Length

40 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|Aa|C|37
5NGM|1|Aa|U|38
5NGM|1|Aa|G|39
5NGM|1|Aa|G|40
5NGM|1|Aa|C|41
*
5NGM|1|Aa|G|410
5NGM|1|Aa|C|411
5NGM|1|Aa|G|412
5NGM|1|Aa|U|413
5NGM|1|Aa|G|414
5NGM|1|Aa|A|415
5NGM|1|Aa|G|416
*
5NGM|1|Aa|C|442
5NGM|1|Aa|U|443
5NGM|1|Aa|C|444
5NGM|1|Aa|U|445
5NGM|1|Aa|G|446
5NGM|1|Aa|U|447
5NGM|1|Aa|U|448
5NGM|1|Aa|A|449
*
5NGM|1|Aa|U|501
5NGM|1|Aa|C|502
5NGM|1|Aa|A|503
5NGM|1|Aa|G|504
5NGM|1|Aa|A|505
5NGM|1|Aa|A|506
5NGM|1|Aa|A|507
5NGM|1|Aa|G|508
5NGM|1|Aa|C|509
5NGM|1|Aa|C|510
5NGM|1|Aa|A|511
5NGM|1|Aa|C|512
*
5NGM|1|Aa|G|549
5NGM|1|Aa|U|550
5NGM|1|Aa|G|551
5NGM|1|Aa|G|552
5NGM|1|Aa|C|553
5NGM|1|Aa|A|554
5NGM|1|Aa|A|555
5NGM|1|Aa|G|556

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S4

Chain Al

30S ribosomal protein S12