J5_5NGM_006
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGGC*GCGUGAG*CUCUGUUA*UCAGAAAGCCAC*GUGGCAAG
- Length
- 40 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NGM|1|Aa|C|37
5NGM|1|Aa|U|38
5NGM|1|Aa|G|39
5NGM|1|Aa|G|40
5NGM|1|Aa|C|41
*
5NGM|1|Aa|G|410
5NGM|1|Aa|C|411
5NGM|1|Aa|G|412
5NGM|1|Aa|U|413
5NGM|1|Aa|G|414
5NGM|1|Aa|A|415
5NGM|1|Aa|G|416
*
5NGM|1|Aa|C|442
5NGM|1|Aa|U|443
5NGM|1|Aa|C|444
5NGM|1|Aa|U|445
5NGM|1|Aa|G|446
5NGM|1|Aa|U|447
5NGM|1|Aa|U|448
5NGM|1|Aa|A|449
*
5NGM|1|Aa|U|501
5NGM|1|Aa|C|502
5NGM|1|Aa|A|503
5NGM|1|Aa|G|504
5NGM|1|Aa|A|505
5NGM|1|Aa|A|506
5NGM|1|Aa|A|507
5NGM|1|Aa|G|508
5NGM|1|Aa|C|509
5NGM|1|Aa|C|510
5NGM|1|Aa|A|511
5NGM|1|Aa|C|512
*
5NGM|1|Aa|G|549
5NGM|1|Aa|U|550
5NGM|1|Aa|G|551
5NGM|1|Aa|G|552
5NGM|1|Aa|C|553
5NGM|1|Aa|A|554
5NGM|1|Aa|A|555
5NGM|1|Aa|G|556
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ad
- 30S ribosomal protein S4
- Chain Al
- 30S ribosomal protein S12
Coloring options: