J5_5NGM_007

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UACAUGCAAG*CGGACGGG*CAC*GAC*GGCAGCAGUA

Length

34 nucleotides

Bulged bases

5NGM|1|Aa|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|Aa|U|53
5NGM|1|Aa|A|54
5NGM|1|Aa|C|55
5NGM|1|Aa|A|56
5NGM|1|Aa|U|57
5NGM|1|Aa|G|58
5NGM|1|Aa|C|59
5NGM|1|Aa|A|60
5NGM|1|Aa|A|61
5NGM|1|Aa|G|62
*
5NGM|1|Aa|C|105
5NGM|1|Aa|G|106
5NGM|1|Aa|G|107
5NGM|1|Aa|A|108
5NGM|1|Aa|C|109
5NGM|1|Aa|G|110
5NGM|1|Aa|G|111
5NGM|1|Aa|G|112
*
5NGM|1|Aa|C|322
5NGM|1|Aa|A|323
5NGM|1|Aa|C|324
*
5NGM|1|Aa|G|345
5NGM|1|Aa|A|346
5NGM|1|Aa|C|347
*
5NGM|1|Aa|G|358
5NGM|1|Aa|G|359
5NGM|1|Aa|C|360
5NGM|1|Aa|A|361
5NGM|1|Aa|G|362
5NGM|1|Aa|C|363
5NGM|1|Aa|A|364
5NGM|1|Aa|G|365
5NGM|1|Aa|U|366
5NGM|1|Aa|A|367

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain AI

50S ribosomal protein L14

Chain AN

50S ribosomal protein L19

Chain Al

30S ribosomal protein S12

Chain Ap

30S ribosomal protein S16

Chain At

30S ribosomal protein S20